Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX25ATP-dependent RNA helicase DDX25. (483 aa)    
Predicted Functional Partners:
DDX19B
ATP-dependent RNA helicase DDX19A.
    
   0.733
GLE1
Nucleoporin GLE1 isoform 1.
    
 
 0.692
HYLS1
HYLS1 centriolar and ciliogenesis associated.
      
 0.686
MYADM
Myeloid-associated differentiation marker.
   
  
 0.679
NUP214
Nucleoporin 214.
    
 
 0.668
F7A100_CALJA
Uncharacterized protein.
    
   0.664
PKNOX2
PBX/knotted 1 homeobox 2.
   
  
 0.663
EIF4B
Eukaryotic translation initiation factor 4B.
   
 
 0.646
EIF4B-2
Uncharacterized protein.
   
 
 0.646
XPO1
Exportin-1.
    
 
 0.621
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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