STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX25ATP-dependent RNA helicase DDX25. (483 aa)    
Predicted Functional Partners:
GLE1
Nucleoporin GLE1 isoform 1.
    
 
 0.857
NUP214
Nucleoporin 214.
    
 
 0.847
UTP18
U3 small nucleolar RNA-associated protein 18 homolog.
      
 0.620
MIF4GD
MIF4G domain containing.
    
   0.612
CTIF
Cap binding complex dependent translation initiation factor.
    
   0.612
PRC1
Protein regulator of cytokinesis 1.
      
 0.598
EIF4B
Eukaryotic translation initiation factor 4B.
   
 
 0.597
EIF4B-2
Uncharacterized protein.
   
 
 0.597
DAZL
Deleted in azoospermia-like; RNA-binding protein, which is essential for gametogenesis in both males and females. Plays a central role during spermatogenesis. Acts by binding to the 3'-UTR of mRNA, specifically recognizing GUU triplets, and thereby regulating the translation of key transcripts (By similarity).
   
 
 0.589
LOC108589991
60S ribosomal protein L39.
   
  
 0.584
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.