STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCN1GCN1 activator of EIF2AK4. (2671 aa)    
Predicted Functional Partners:
ABCF3
ATP-binding cassette sub-family F member 3.
   
 
 0.981
DRG2
Developmentally-regulated GTP-binding protein 2.
   
 
 0.930
RPS3
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.883
RACK1
Receptor for activated C kinase 1.
   
 
 0.878
RPL19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 
   0.875
F7HV41_CALJA
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 
   0.874
ENSCJAP00000079012
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 
   0.874
RPS5
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
   
 
 0.872
ENSCJAP00000062748
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 
   0.871
EEF2
Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]
   
 
 0.867
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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