STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEMA5ASemaphorin 5A. (1074 aa)    
Predicted Functional Partners:
PLXNB3
Plexin B3.
    
 0.909
SEMA5B
Semaphorin 5B.
  
  
0.903
PLXNB2
Plexin-B2.
    
 0.734
PLXNC1
Plexin C1.
    
 0.665
NRP1
Neuropilin; Belongs to the neuropilin family.
    
 0.634
IQCK
IQ motif containing K.
      
 0.618
PLXNA3
Plexin A3.
    
 0.612
CDH9
Cadherin 9; Cadherins are calcium-dependent cell adhesion proteins.
     
 0.595
CLVS1
Clavesin 1.
    
 
 0.583
ENSCJAP00000063570
FPG_CAT domain-containing protein.
      
 0.582
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.