STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VCPTransitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (806 aa)    
Predicted Functional Partners:
NPLOC4
Nuclear protein localization protein 4 homolog.
   
 0.999
UBXN6
UBX domain protein 6.
    
 0.999
UBXN7
UBX domain-containing protein 7.
   
 0.999
NSFL1C
NSFL1 cofactor p47 isoform d.
   
 0.999
UFD1
Uncharacterized protein.
    
 0.999
UBXN4
UBX domain-containing protein 4.
   
 0.997
UBXN1
UBX domain protein 1.
   
 0.997
UBXN2A
UBX domain-containing protein 2A.
   
 0.996
FAF1
FAS-associated factor 1.
   
 0.987
YOD1
YOD1 deubiquitinase.
   
 0.984
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.