STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABGAP1LRab GTPase-activating protein 1-like isoform A. (815 aa)    
Predicted Functional Partners:
RABGEF1
Rab5 GDP/GTP exchange factor.
   
  0.921
RAB22A
Ras-related protein Rab-22A.
    
 0.831
RAB34
RAB34, member RAS oncogene family.
    
 0.765
RAP2A
Uncharacterized protein.
    
 0.736
ALS2CL
ALS2 C-terminal like.
      
 0.726
SYT11
Synaptotagmin 11.
      
 0.638
RAB11FIP5
Uncharacterized protein.
      
 0.629
RAB6B
Uncharacterized protein.
    
 0.540
RAB6A
Ras-related protein Rab-6A isoform b.
    
 0.540
RAB41
Uncharacterized protein.
    
 0.536
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.