SCAF4 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCAF4

Splicing factor, arginine/serine-rich 15 isoform 1. (1149 aa)

Predicted Functional Partners:

SETX

0.900

POLR2A

0.873

NCBP2

0.770

EXOSC10

0.641

RNMT

0.633

NCBP1

0.630

TENT4B

0.629

TENT4A

0.629

PCF11

0.620

POLR2B

0.613

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EXOSC10	NCBP1	ENSCJAP00000004233	ENSCJAP00000020106	Exosome component 10.	Nuclear cap-binding protein subunit 1.	0.575
EXOSC10	PCF11	ENSCJAP00000004233	ENSCJAP00000026942	Exosome component 10.	PCF11 cleavage and polyadenylation factor subunit.	0.412
EXOSC10	POLR2A	ENSCJAP00000004233	ENSCJAP00000028013	Exosome component 10.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.456
EXOSC10	SCAF4	ENSCJAP00000004233	ENSCJAP00000016619	Exosome component 10.	Splicing factor, arginine/serine-rich 15 isoform 1.	0.641
EXOSC10	SETX	ENSCJAP00000004233	ENSCJAP00000073249	Exosome component 10.	Senataxin.	0.707
EXOSC10	TENT4A	ENSCJAP00000004233	ENSCJAP00000016149	Exosome component 10.	Terminal nucleotidyltransferase 4A.	0.758
EXOSC10	TENT4B	ENSCJAP00000004233	ENSCJAP00000003557	Exosome component 10.	Terminal nucleotidyltransferase 4B.	0.758
NCBP1	EXOSC10	ENSCJAP00000020106	ENSCJAP00000004233	Nuclear cap-binding protein subunit 1.	Exosome component 10.	0.575
NCBP1	NCBP2	ENSCJAP00000020106	ENSCJAP00000063240	Nuclear cap-binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.999
NCBP1	PCF11	ENSCJAP00000020106	ENSCJAP00000026942	Nuclear cap-binding protein subunit 1.	PCF11 cleavage and polyadenylation factor subunit.	0.851
NCBP1	POLR2A	ENSCJAP00000020106	ENSCJAP00000028013	Nuclear cap-binding protein subunit 1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.732
NCBP1	POLR2B	ENSCJAP00000020106	ENSCJAP00000007614	Nuclear cap-binding protein subunit 1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.795
NCBP1	RNMT	ENSCJAP00000020106	ENSCJAP00000072165	Nuclear cap-binding protein subunit 1.	mRNA cap guanine-N7 methyltransferase.	0.807
NCBP1	SCAF4	ENSCJAP00000020106	ENSCJAP00000016619	Nuclear cap-binding protein subunit 1.	Splicing factor, arginine/serine-rich 15 isoform 1.	0.630
NCBP1	SETX	ENSCJAP00000020106	ENSCJAP00000073249	Nuclear cap-binding protein subunit 1.	Senataxin.	0.487
NCBP2	NCBP1	ENSCJAP00000063240	ENSCJAP00000020106	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Nuclear cap-binding protein subunit 1.	0.999
NCBP2	PCF11	ENSCJAP00000063240	ENSCJAP00000026942	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	PCF11 cleavage and polyadenylation factor subunit.	0.806
NCBP2	POLR2A	ENSCJAP00000063240	ENSCJAP00000028013	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.750
NCBP2	POLR2B	ENSCJAP00000063240	ENSCJAP00000007614	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.874
NCBP2	RNMT	ENSCJAP00000063240	ENSCJAP00000072165	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	mRNA cap guanine-N7 methyltransferase.	0.802