STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AVL9Late secretory pathway protein AVL9 homolog. (652 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
      
 0.645
RAB30
RAB30, member RAS oncogene family.
      
 0.644
RAB33B
Ras-related protein Rab-33B.
      
 0.594
FAM45A
DENN domain containing 10.
      
 0.583
DENND11
DENN domain containing 11.
      
 0.576
RAB33A
RAB33A, member RAS oncogene family.
      
 0.566
DENND6A
DENN domain containing 6A.
      
 0.564
RAB18
RAB18, member RAS oncogene family.
      
 0.523
DENND4B
DENN domain containing 4B.
      
 0.521
DENND2A
DENN domain-containing protein 2A.
      
 0.515
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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