STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRM4Serine/arginine repetitive matrix 4. (615 aa)    
Predicted Functional Partners:
SLC52A3
Solute carrier family 52, riboflavin transporter, member 3.
      
 0.839
CLIC5
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
      
 0.809
TMC1
Transmembrane channel-like protein.
    
 0.803
CLCA2
Chloride channel accessory 2.
    
 0.795
OTOF
Otoferlin.
      
 0.783
ILDR2
Immunoglobulin like domain containing receptor 2.
     
 0.780
WFS1
Wolframin ER transmembrane glycoprotein.
      
 0.778
SLC17A8
Solute carrier family 17 member 8.
   
  
 0.737
CDH23
Cadherin related 23.
      
 0.736
STOX1
Storkhead box 1.
      
 0.718
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.