STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF6Membrane associated ring-CH-type finger 6. (906 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 
 0.908
UBE2G2
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.801
UBE2J2
Ubiquitin-conjugating enzyme E2 J2 isoform 2.
    
 
 0.773
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1.
    
 
 0.772
SPATA5
Spermatogenesis associated 5.
    
 
 0.772
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 
 0.772
AMFR
Autocrine motility factor receptor.
    
 
 0.766
SYVN1
E3 ubiquitin-protein ligase synoviolin isoform b.
    
 
 0.766
C1QTNF12
C1q and TNF related 12.
    
 
 0.744
DSPP
Dentin sialophosphoprotein.
    
 
 0.735
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.