OLAH protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OLAH

Oleoyl-ACP hydrolase. (267 aa)

Predicted Functional Partners:

OXSM

0.960

MECR

0.915

LIPT1

0.802

LIPT2

0.800

TEKT2

0.586

ENSCJAP00000070348

0.565

DDX6

0.551

USF2

0.520

GPAM

0.511

RIPK4

0.446

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX6	OLAH	ENSCJAP00000025033	ENSCJAP00000016940	Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Oleoyl-ACP hydrolase.	0.551
DDX6	TEKT2	ENSCJAP00000025033	ENSCJAP00000003064	Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Tektin-2.	0.449
DDX6	USF2	ENSCJAP00000025033	ENSCJAP00000072051	Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	Upstream transcription factor 2, c-fos interacting.	0.401
ENSCJAP00000070348	GPAM	ENSCJAP00000070348	ENSCJAP00000035166	Uncharacterized protein.	Glycerol-3-phosphate acyltransferase 1, mitochondrial.	0.418
ENSCJAP00000070348	MECR	ENSCJAP00000070348	ENSCJAP00000018408	Uncharacterized protein.	Mitochondrial trans-2-enoyl-CoA reductase.	0.480
ENSCJAP00000070348	OLAH	ENSCJAP00000070348	ENSCJAP00000016940	Uncharacterized protein.	Oleoyl-ACP hydrolase.	0.565
GPAM	ENSCJAP00000070348	ENSCJAP00000035166	ENSCJAP00000070348	Glycerol-3-phosphate acyltransferase 1, mitochondrial.	Uncharacterized protein.	0.418
GPAM	OLAH	ENSCJAP00000035166	ENSCJAP00000016940	Glycerol-3-phosphate acyltransferase 1, mitochondrial.	Oleoyl-ACP hydrolase.	0.511
GPAM	OXSM	ENSCJAP00000035166	ENSCJAP00000007436	Glycerol-3-phosphate acyltransferase 1, mitochondrial.	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.477
LIPT1	LIPT2	ENSCJAP00000013166	ENSCJAP00000056641	Lipoyltransferase 1, mitochondrial.	Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.	0.981
LIPT1	MECR	ENSCJAP00000013166	ENSCJAP00000018408	Lipoyltransferase 1, mitochondrial.	Mitochondrial trans-2-enoyl-CoA reductase.	0.838
LIPT1	OLAH	ENSCJAP00000013166	ENSCJAP00000016940	Lipoyltransferase 1, mitochondrial.	Oleoyl-ACP hydrolase.	0.802
LIPT1	OXSM	ENSCJAP00000013166	ENSCJAP00000007436	Lipoyltransferase 1, mitochondrial.	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.850
LIPT2	LIPT1	ENSCJAP00000056641	ENSCJAP00000013166	Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.	Lipoyltransferase 1, mitochondrial.	0.981
LIPT2	MECR	ENSCJAP00000056641	ENSCJAP00000018408	Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.	Mitochondrial trans-2-enoyl-CoA reductase.	0.874
LIPT2	OLAH	ENSCJAP00000056641	ENSCJAP00000016940	Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.	Oleoyl-ACP hydrolase.	0.800
LIPT2	OXSM	ENSCJAP00000056641	ENSCJAP00000007436	Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial; May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.828
MECR	ENSCJAP00000070348	ENSCJAP00000018408	ENSCJAP00000070348	Mitochondrial trans-2-enoyl-CoA reductase.	Uncharacterized protein.	0.480
MECR	LIPT1	ENSCJAP00000018408	ENSCJAP00000013166	Mitochondrial trans-2-enoyl-CoA reductase.	Lipoyltransferase 1, mitochondrial.	0.838
MECR	LIPT2	ENSCJAP00000018408	ENSCJAP00000056641	Mitochondrial trans-2-enoyl-CoA reductase.	Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.	0.874