SUPT16H protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SUPT16H

SPT16 homolog, facilitates chromatin remodeling subunit. (1047 aa)

Predicted Functional Partners:

SSRP1

0.999

SUPT6H

0.973

LEO1

0.970

CTR9

0.965

TNKS1BP1

0.960

SUPT5H

0.958

POLR2B

0.949

PAF1

0.946

POLR2C

0.945

SUPT4H1

0.944

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTR9	LEO1	ENSCJAP00000020046	ENSCJAP00000001668	CTR9 homolog, Paf1/RNA polymerase II complex component.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
CTR9	PAF1	ENSCJAP00000020046	ENSCJAP00000056734	CTR9 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II-associated factor 1 homolog isoform 1.	0.998
CTR9	POLR2B	ENSCJAP00000020046	ENSCJAP00000007614	CTR9 homolog, Paf1/RNA polymerase II complex component.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.723
CTR9	POLR2C	ENSCJAP00000020046	ENSCJAP00000022094	CTR9 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit C.	0.851
CTR9	SSRP1	ENSCJAP00000020046	ENSCJAP00000059490	CTR9 homolog, Paf1/RNA polymerase II complex component.	HMG box domain-containing protein.	0.946
CTR9	SUPT16H	ENSCJAP00000020046	ENSCJAP00000017005	CTR9 homolog, Paf1/RNA polymerase II complex component.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.965
CTR9	SUPT4H1	ENSCJAP00000020046	ENSCJAP00000031994	CTR9 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.875
CTR9	SUPT5H	ENSCJAP00000020046	ENSCJAP00000026224	CTR9 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT5.	0.901
CTR9	SUPT6H	ENSCJAP00000020046	ENSCJAP00000023999	CTR9 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.921
CTR9	TNKS1BP1	ENSCJAP00000020046	ENSCJAP00000016600	CTR9 homolog, Paf1/RNA polymerase II complex component.	182 kDa tankyrase-1-binding protein.	0.903
LEO1	CTR9	ENSCJAP00000001668	ENSCJAP00000020046	LEO1 homolog, Paf1/RNA polymerase II complex component.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
LEO1	PAF1	ENSCJAP00000001668	ENSCJAP00000056734	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II-associated factor 1 homolog isoform 1.	0.997
LEO1	POLR2B	ENSCJAP00000001668	ENSCJAP00000007614	LEO1 homolog, Paf1/RNA polymerase II complex component.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.835
LEO1	POLR2C	ENSCJAP00000001668	ENSCJAP00000022094	LEO1 homolog, Paf1/RNA polymerase II complex component.	RNA polymerase II subunit C.	0.836
LEO1	SSRP1	ENSCJAP00000001668	ENSCJAP00000059490	LEO1 homolog, Paf1/RNA polymerase II complex component.	HMG box domain-containing protein.	0.960
LEO1	SUPT16H	ENSCJAP00000001668	ENSCJAP00000017005	LEO1 homolog, Paf1/RNA polymerase II complex component.	SPT16 homolog, facilitates chromatin remodeling subunit.	0.970
LEO1	SUPT4H1	ENSCJAP00000001668	ENSCJAP00000031994	LEO1 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.822
LEO1	SUPT5H	ENSCJAP00000001668	ENSCJAP00000026224	LEO1 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor SPT5.	0.905
LEO1	SUPT6H	ENSCJAP00000001668	ENSCJAP00000023999	LEO1 homolog, Paf1/RNA polymerase II complex component.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.810
LEO1	TNKS1BP1	ENSCJAP00000001668	ENSCJAP00000016600	LEO1 homolog, Paf1/RNA polymerase II complex component.	182 kDa tankyrase-1-binding protein.	0.935