STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IRX4Iroquois homeobox 4. (520 aa)    
Predicted Functional Partners:
NPPA
Natriuretic peptide A.
      
 0.694
DIPK1C
Divergent protein kinase domain 1C.
    
 
 0.643
KCNJ3
Uncharacterized protein.
      
 0.642
MYL7
Myosin light chain 7.
      
 0.584
HOXD13
Homeobox protein Hox-D13.
  
 
 
 0.561
NKX2-5
NK2 homeobox 5.
   
 
 0.533
MAL2
Mal, T cell differentiation protein 2 (gene/pseudogene).
   
  
 0.527
SRF
Serum response factor.
   
 
 0.495
ANGPTL7
Angiopoietin-related protein 7.
   
  
 0.482
SFRP4
Secreted frizzled related protein 4.
    
 
 0.478
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.