STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NKX1-1NK1 homeobox 1. (445 aa)    
Predicted Functional Partners:
SOX18
SRY-box transcription factor 18.
  
 
 
 0.479
IRX4
Iroquois homeobox 4.
   
 
 0.459
POU3F1
POU domain protein.
  
   
 0.457
IRX2
Iroquois homeobox 2.
   
 
 0.429
FOXN4
Forkhead box N4.
   
 0.422
LHX4
LIM homeobox 4.
   
  
 0.421
LHX8
LIM homeobox 8.
   
 
 0.418
POU4F3
POU domain protein.
   
  
 0.416
POU4F2
POU domain protein.
   
  
 0.412
FOXR1
Forkhead box R1.
    
 0.411
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.