STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLCO6A1Solute carrier organic anion transporter family member. (712 aa)    
Predicted Functional Partners:
CDH1
Cadherin 1; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.650
HPGDS
Hematopoietic prostaglandin D synthase.
   
  
 0.648
FMO4
Dimethylaniline monooxygenase [N-oxide-forming].
   
  
 0.645
FMO1
Dimethylaniline monooxygenase [N-oxide-forming].
   
  
 0.645
RTKN
Rhotekin.
      
 0.645
EFCAB9
EF-hand calcium binding domain 9.
   
 
 0.587
FMO5
Dimethylaniline monooxygenase [N-oxide-forming].
   
  
 0.559
AKT1
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
      
 0.547
GSTP1
Uncharacterized protein; Belongs to the GST superfamily.
   
  
 0.541
CATSPER1
Cation channel sperm associated 1.
    
 
 0.532
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.