STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMP13Matrix metallopeptidase 13. (487 aa)    
Predicted Functional Partners:
ACAN
Aggrecan.
   
 0.840
ADAMTS4
ADAM metallopeptidase with thrombospondin type 1 motif 4.
   
 
 0.819
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
   
 
 0.811
TIMP3
Uncharacterized protein.
   
 0.799
CTSK
Cathepsin K preproprotein; Belongs to the peptidase C1 family.
   
 
 0.777
COL2A1
Collagen type II alpha 1 chain.
   
 0.775
TIMP1
TIMP metallopeptidase inhibitor 1.
   
 0.739
DCN
Decorin; May affect the rate of fibrils formation.
   
 0.734
MMP14
Matrix metalloproteinase-14 preproprotein.
  
0.722
COL10A1
Collagen type X alpha 1 chain.
   
 0.707
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.