STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNFT2Ring finger protein, transmembrane 2. (444 aa)    
Predicted Functional Partners:
RNF223
RING finger protein 223.
      
 0.814
RNF144A
RBR-type E3 ubiquitin transferase.
      
 0.812
RNF183
Ring finger protein 183.
      
 0.811
TMEM129
Transmembrane protein 129.
      
 0.810
RNF130
E3 ubiquitin-protein ligase RNF130.
      
 0.792
RNF144B
RBR-type E3 ubiquitin transferase.
      
 0.770
RNF19A
RBR-type E3 ubiquitin transferase.
      
 0.629
ZNRF4
Zinc and ring finger 4.
      
 0.605
BNIP1
Vesicle transport protein SEC20 isoform BNIP1.
      
 0.570
RNF152
E3 ubiquitin-protein ligase RNF152.
      
 0.570
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.