STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USHBP1USH1 protein network component harmonin binding protein 1. (701 aa)    
Predicted Functional Partners:
MMRN2
Multimerin 2.
   
  
 0.761
IGDCC3
Immunoglobulin superfamily DCC subclass member 3.
    
 0.644
IGDCC4
Immunoglobulin superfamily DCC subclass member 4.
    
 0.644
NEO1
Neogenin isoform 1.
    
 0.644
FNDC1
Fibronectin type III domain containing 1.
    
 0.644
DCC
DCC netrin 1 receptor.
    
 0.644
MCCC2
Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial.
      
 0.630
USH1C
USH1 protein network component harmonin.
    
 
 0.573
ZBTB25
Zinc finger and BTB domain-containing protein 25.
      
 0.558
GMCL1
BTB domain-containing protein.
    
 
 0.543
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.