STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRNAU1APtRNA selenocysteine 1-associated protein 1. (287 aa)    
Predicted Functional Partners:
TRMT10B
tRNA methyltransferase 10 homolog B.
   
 
 0.792
TM4SF19
Uncharacterized protein.
      
 0.776
SH2D2A
SH2 domain containing 2A.
      
 0.772
CRACR2A
Calcium release activated channel regulator 2A.
   
 
 0.739
PRPF39
Pre-mRNA-processing factor 39.
   
 
 0.660
NCBP2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.640
NCBP1
Nuclear cap-binding protein subunit 1.
    
 0.625
EEFSEC
Eukaryotic elongation factor, selenocysteine-tRNA specific.
   
 0.624
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 0.606
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.600
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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