STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNPT1Polyribonucleotide nucleotidyltransferase 1. (784 aa)    
Predicted Functional Partners:
EXOSC10
Exosome component 10.
   
 
 0.961
DIS3
Exosome complex exonuclease RRP44 isoform a; Belongs to the RNR ribonuclease family.
   
 
 0.907
EXOSC8
Exosome component 8.
   
 
 0.862
DOCK5
Dedicator of cytokinesis 5; Belongs to the DOCK family.
      
 0.858
SUPV3L1
ATP-dependent RNA helicase SUPV3L1, mitochondrial.
   
 0.831
TRNT1
CCA tRNA nucleotidyltransferase 1, mitochondrial; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
 0.819
MTIF2
Translation initiation factor IF-2, mitochondrial.
  
  
 0.813
ENSCJAP00000076241
Tr-type G domain-containing protein.
  
  
 0.813
MRPL17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.812
PDCD11
Programmed cell death 11.
  
  
 0.808
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.