NUP210L protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NUP210L

Nucleoporin 210 like. (1884 aa)

Predicted Functional Partners:

RANBP2

0.971

NUP107

0.918

NUP210

0.907

NUP155

0.904

NUP35

0.902

NUP160

0.899

NUP205

0.892

NUP133

0.892

NUP85

0.891

NUP93

0.890

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NUP107	NUP133	ENSCJAP00000013800	ENSCJAP00000071723	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup133.	0.999
NUP107	NUP155	ENSCJAP00000013800	ENSCJAP00000033236	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup155 isoform 1.	0.996
NUP107	NUP160	ENSCJAP00000013800	ENSCJAP00000037753	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 160.	0.999
NUP107	NUP205	ENSCJAP00000013800	ENSCJAP00000052957	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup205.	0.997
NUP107	NUP210	ENSCJAP00000013800	ENSCJAP00000030998	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore membrane glycoprotein 210.	0.943
NUP107	NUP210L	ENSCJAP00000013800	ENSCJAP00000018211	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 210 like.	0.918
NUP107	NUP35	ENSCJAP00000013800	ENSCJAP00000071576	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.989
NUP107	NUP85	ENSCJAP00000013800	ENSCJAP00000026771	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
NUP107	NUP93	ENSCJAP00000013800	ENSCJAP00000023034	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.997
NUP107	RANBP2	ENSCJAP00000013800	ENSCJAP00000063818	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	RAN binding protein 2.	0.999
NUP133	NUP107	ENSCJAP00000071723	ENSCJAP00000013800	Nuclear pore complex protein Nup133.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
NUP133	NUP155	ENSCJAP00000071723	ENSCJAP00000033236	Nuclear pore complex protein Nup133.	Nuclear pore complex protein Nup155 isoform 1.	0.995
NUP133	NUP160	ENSCJAP00000071723	ENSCJAP00000037753	Nuclear pore complex protein Nup133.	Nucleoporin 160.	0.999
NUP133	NUP205	ENSCJAP00000071723	ENSCJAP00000052957	Nuclear pore complex protein Nup133.	Nuclear pore complex protein Nup205.	0.989
NUP133	NUP210	ENSCJAP00000071723	ENSCJAP00000030998	Nuclear pore complex protein Nup133.	Nuclear pore membrane glycoprotein 210.	0.904
NUP133	NUP210L	ENSCJAP00000071723	ENSCJAP00000018211	Nuclear pore complex protein Nup133.	Nucleoporin 210 like.	0.892
NUP133	NUP35	ENSCJAP00000071723	ENSCJAP00000071576	Nuclear pore complex protein Nup133.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.987
NUP133	NUP85	ENSCJAP00000071723	ENSCJAP00000026771	Nuclear pore complex protein Nup133.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
NUP133	NUP93	ENSCJAP00000071723	ENSCJAP00000023034	Nuclear pore complex protein Nup133.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.988
NUP133	RANBP2	ENSCJAP00000071723	ENSCJAP00000063818	Nuclear pore complex protein Nup133.	RAN binding protein 2.	0.999