STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RGP1Retrograde Golgi transport protein RGP1 homolog. (391 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.987
VPS52
Vacuolar protein sorting-associated protein 52 homolog.
     
 0.763
VPS53
Vacuolar protein sorting-associated protein 53 homolog isoform 1.
     
 0.763
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.761
VPS54
Vacuolar protein sorting-associated protein 54 isoform 1.
     
 0.749
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.728
RAB6B
Uncharacterized protein.
    
 0.727
RAB6A
Ras-related protein Rab-6A isoform b.
    
 0.727
RAB41
Uncharacterized protein.
    
 0.727
STX16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.697
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.