STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL9A3Collagen type IX alpha 3 chain. (732 aa)    
Predicted Functional Partners:
COL9A1
Collagen type IX alpha 1 chain.
  
0.948
COL9A2
Collagen type IX alpha 2 chain.
  
0.947
ERCC5
Uncharacterized protein.
    
 0.718
ZNF563
Uncharacterized protein.
    
 0.634
MATN3
Matrilin 3.
   
 0.629
PTK6
Tyrosine-protein kinase.
    
 0.620
SLC17A9
Solute carrier family 17 member 9.
      
 0.613
VPS33A
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.581
NALCN
Sodium leak channel non-selective protein.
      
 0.506
EXOSC10
Exosome component 10.
   
 
 0.487
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.