STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH3G-patch domain containing 3. (529 aa)    
Predicted Functional Partners:
ZNF408
Zinc finger protein 408.
   
    0.889
RSPRY1
RING finger and SPRY domain-containing protein 1.
      
 0.571
EAF1
ELL associated factor 1.
      
 0.566
CDIPT
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
      
 0.550
SNX20
Sorting nexin 20.
      
 0.524
GARS1
Glycyl-tRNA synthetase.
      
 0.477
SLC25A24
Solute carrier family 25 member 24; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.464
GGCT
Gamma-glutamylcyclotransferase isoform 1.
      
 0.459
RPL14
Ribosomal_L14e domain-containing protein.
      
 0.454
EFCAB1
EF-hand calcium binding domain 1.
      
 0.453
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.