STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TXNL4AUncharacterized protein. (99 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA-processing factor 6.
    
 0.964
DDX23
Putative ATP-dependent RNA helicase DDX23.
    
 0.958
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 0.954
SNRPD3
Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.
   
  0.954
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.932
PQBP1
Polyglutamine-binding protein 1 isoform 1.
   
 0.928
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.915
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 0.915
PRPF31
PRP31 pre-mRNA processing factor 31 homolog (Predicted).
    
 0.915
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component isoform a.
    
 0.912
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.