Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NKX6-2NK6 homeobox 2. (278 aa)    
Predicted Functional Partners:
SOX8
SRY-box transcription factor 8.
   
  
 0.546
OLIG1
Oligodendrocyte transcription factor 1.
   
  
 0.526
OLIG2
Oligodendrocyte lineage transcription factor 2 (Predicted).
   
  
 0.504
PTF1A
Pancreas associated transcription factor 1a.
      
 0.482
PDX1
Homeobox domain-containing protein.
   
 0.481
SOX10
Transcription factor SOX-10.
   
  
 0.481
POU4F3
POU domain protein.
   
  
 0.457
NEUROG1
BHLH domain-containing protein.
   
  
 0.446
LHX4
LIM homeobox 4.
    
 
 0.442
LHX6
LIM homeobox 6.
   
 
 0.442
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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