STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NKX6-2NK6 homeobox 2. (278 aa)    
Predicted Functional Partners:
SOX8
SRY-box transcription factor 8.
   
  
 0.499
LHX4
LIM homeobox 4.
    
 
 0.468
TMEM37
Transmembrane protein 37.
      
 0.453
IRX2
Iroquois homeobox 2.
      
 0.453
LHX6
LIM homeobox 6.
   
 
 0.431
PLXNB3
Plexin B3.
   
  
 0.427
SLITRK6
SLIT and NTRK like family member 6.
      
 0.424
ITPKB
Kinase; Belongs to the inositol phosphokinase (IPK) family.
      
 0.420
GLIS2
GLIS family zinc finger 2.
      
 0.420
LHX3
Uncharacterized protein.
    
 
 0.416
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.