STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL12A1Collagen type XII alpha 1 chain. (3063 aa)    
Predicted Functional Partners:
COL5A1
Collagen alpha-1(V) chain preproprotein.
   
0.856
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.850
COL4A2
Collagen type IV alpha 2 chain.
   
0.771
NUDCD1
NudC domain-containing protein 1 isoform 1.
    
 
 0.737
MMP2
72 kDa type IV collagenase isoform a preproprotein.
   
 0.735
COL4A6
Collagen type IV alpha 6 chain.
   
 0.711
COL5A2
Collagen alpha-2(V) chain preproprotein.
   
0.702
COL22A1
Collagen type XXII alpha 1 chain.
    
 0.692
MMP12
Matrix metallopeptidase 12.
   
 0.690
COL8A2
Collagen type VIII alpha 2 chain.
    
0.658
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.