STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL12A1Collagen type XII alpha 1 chain. (3063 aa)    
Predicted Functional Partners:
COL4A2
Collagen type IV alpha 2 chain.
   
0.746
COL4A6
Collagen type IV alpha 6 chain.
   
0.706
LAMC1
Laminin subunit gamma-1.
   
 0.630
COL5A1
Collagen alpha-1(V) chain preproprotein.
   
0.623
ITGBL1
Integrin subunit beta like 1.
   
 0.622
COL5A2
Collagen alpha-2(V) chain preproprotein.
   
0.604
COL22A1
Collagen type XXII alpha 1 chain.
    
0.583
LAMA4
Laminin subunit alpha-4 isoform 1.
   
 0.581
THBS2
Thrombospondin 2.
   
 0.555
COL1A1
Collagen alpha-1(I) chain preproprotein.
   
0.529
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.