STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF3A1Splicing factor 3A subunit 1 isoform 1. (793 aa)    
Predicted Functional Partners:
SF3A3
Splicing factor 3A subunit 3.
   
 0.999
SF3A2
Splicing factor 3A subunit 2.
   
 0.999
SF3B2
Splicing factor 3B subunit 2.
   
 0.994
SF3B1
Splicing factor 3B subunit 1 isoform 1.
   
 0.992
SF3B4
Splicing factor 3B subunit 4.
   
 0.987
SF3B3
Splicing factor 3B subunit 3.
   
 0.986
RBM17
RNA binding motif protein 17.
   
 0.980
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.977
DDX42
ATP-dependent RNA helicase DDX42.
   
 0.966
DDX46
DEAD-box helicase 46.
   
 0.963
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.