ARHGAP20 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ARHGAP20

Rho GTPase activating protein 20. (1193 aa)

Predicted Functional Partners:

GTF2E2

0.898

NEMP1

0.896

RIOK1

0.831

MAP3K9

0.790

RHOA

0.695

ENSCJAP00000068434

0.695

ENSCJAP00000071515

0.695

RHOC

0.672

PIWIL2

0.657

ASB1

0.642

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP20	ASB1	ENSCJAP00000019242	ENSCJAP00000067572	Rho GTPase activating protein 20.	Ankyrin repeat and SOCS box containing 1.	0.642
ARHGAP20	ENSCJAP00000068434	ENSCJAP00000019242	ENSCJAP00000068434	Rho GTPase activating protein 20.	Uncharacterized protein.	0.695
ARHGAP20	ENSCJAP00000071515	ENSCJAP00000019242	ENSCJAP00000071515	Rho GTPase activating protein 20.	Uncharacterized protein.	0.695
ARHGAP20	GTF2E2	ENSCJAP00000019242	ENSCJAP00000022714	Rho GTPase activating protein 20.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.898
ARHGAP20	MAP3K9	ENSCJAP00000019242	ENSCJAP00000027195	Rho GTPase activating protein 20.	Uncharacterized protein.	0.790
ARHGAP20	NEMP1	ENSCJAP00000019242	ENSCJAP00000062536	Rho GTPase activating protein 20.	Nuclear envelope integral membrane protein 1.	0.896
ARHGAP20	PIWIL2	ENSCJAP00000019242	ENSCJAP00000037673	Rho GTPase activating protein 20.	Piwi like RNA-mediated gene silencing 2; Belongs to the argonaute family.	0.657
ARHGAP20	RHOA	ENSCJAP00000019242	ENSCJAP00000025155	Rho GTPase activating protein 20.	Transforming protein RhoA.	0.695
ARHGAP20	RHOC	ENSCJAP00000019242	ENSCJAP00000062988	Rho GTPase activating protein 20.	Uncharacterized protein.	0.672
ARHGAP20	RIOK1	ENSCJAP00000019242	ENSCJAP00000048388	Rho GTPase activating protein 20.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.831
ASB1	ARHGAP20	ENSCJAP00000067572	ENSCJAP00000019242	Ankyrin repeat and SOCS box containing 1.	Rho GTPase activating protein 20.	0.642
ASB1	GTF2E2	ENSCJAP00000067572	ENSCJAP00000022714	Ankyrin repeat and SOCS box containing 1.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.623
ASB1	MAP3K9	ENSCJAP00000067572	ENSCJAP00000027195	Ankyrin repeat and SOCS box containing 1.	Uncharacterized protein.	0.539
ASB1	NEMP1	ENSCJAP00000067572	ENSCJAP00000062536	Ankyrin repeat and SOCS box containing 1.	Nuclear envelope integral membrane protein 1.	0.620
ASB1	RIOK1	ENSCJAP00000067572	ENSCJAP00000048388	Ankyrin repeat and SOCS box containing 1.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.517
ENSCJAP00000068434	ARHGAP20	ENSCJAP00000068434	ENSCJAP00000019242	Uncharacterized protein.	Rho GTPase activating protein 20.	0.695
ENSCJAP00000071515	ARHGAP20	ENSCJAP00000071515	ENSCJAP00000019242	Uncharacterized protein.	Rho GTPase activating protein 20.	0.695
GTF2E2	ARHGAP20	ENSCJAP00000022714	ENSCJAP00000019242	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Rho GTPase activating protein 20.	0.898
GTF2E2	ASB1	ENSCJAP00000022714	ENSCJAP00000067572	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Ankyrin repeat and SOCS box containing 1.	0.623
GTF2E2	MAP3K9	ENSCJAP00000022714	ENSCJAP00000027195	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	Uncharacterized protein.	0.787