CAPRIN1 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CAPRIN1

Cell cycle associated protein 1. (709 aa)

Predicted Functional Partners:

G3BP1

0.992

G3BP2

0.968

TIA1

0.722

FXR2

0.711

USP10

0.696

NAT10

0.692

FXR1

0.686

FMR1

0.668

CSDE1

0.663

NUFIP2

0.659

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPRIN1	CSDE1	ENSCJAP00000019497	ENSCJAP00000064257	Cell cycle associated protein 1.	Cold shock domain containing E1.	0.663
CAPRIN1	FMR1	ENSCJAP00000019497	ENSCJAP00000056898	Cell cycle associated protein 1.	Uncharacterized protein.	0.668
CAPRIN1	FXR1	ENSCJAP00000019497	ENSCJAP00000023572	Cell cycle associated protein 1.	FMR1 autosomal homolog 1.	0.686
CAPRIN1	FXR2	ENSCJAP00000019497	ENSCJAP00000027807	Cell cycle associated protein 1.	Fragile X mental retardation syndrome-related protein 2.	0.711
CAPRIN1	G3BP1	ENSCJAP00000019497	ENSCJAP00000028538	Cell cycle associated protein 1.	Ras GTPase-activating protein-binding protein 1.	0.992
CAPRIN1	G3BP2	ENSCJAP00000019497	ENSCJAP00000037041	Cell cycle associated protein 1.	Ras GTPase-activating protein-binding protein 2 isoform a.	0.968
CAPRIN1	NAT10	ENSCJAP00000019497	ENSCJAP00000019721	Cell cycle associated protein 1.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.692
CAPRIN1	NUFIP2	ENSCJAP00000019497	ENSCJAP00000024845	Cell cycle associated protein 1.	Nuclear fragile X mental retardation-interacting protein 2.	0.659
CAPRIN1	TIA1	ENSCJAP00000019497	ENSCJAP00000035808	Cell cycle associated protein 1.	TIA1 cytotoxic granule associated RNA binding protein.	0.722
CAPRIN1	USP10	ENSCJAP00000019497	ENSCJAP00000007428	Cell cycle associated protein 1.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.696
CSDE1	CAPRIN1	ENSCJAP00000064257	ENSCJAP00000019497	Cold shock domain containing E1.	Cell cycle associated protein 1.	0.663
CSDE1	FXR1	ENSCJAP00000064257	ENSCJAP00000023572	Cold shock domain containing E1.	FMR1 autosomal homolog 1.	0.442
CSDE1	G3BP1	ENSCJAP00000064257	ENSCJAP00000028538	Cold shock domain containing E1.	Ras GTPase-activating protein-binding protein 1.	0.543
CSDE1	G3BP2	ENSCJAP00000064257	ENSCJAP00000037041	Cold shock domain containing E1.	Ras GTPase-activating protein-binding protein 2 isoform a.	0.488
FMR1	CAPRIN1	ENSCJAP00000056898	ENSCJAP00000019497	Uncharacterized protein.	Cell cycle associated protein 1.	0.668
FMR1	FXR1	ENSCJAP00000056898	ENSCJAP00000023572	Uncharacterized protein.	FMR1 autosomal homolog 1.	0.783
FMR1	FXR2	ENSCJAP00000056898	ENSCJAP00000027807	Uncharacterized protein.	Fragile X mental retardation syndrome-related protein 2.	0.982
FMR1	G3BP1	ENSCJAP00000056898	ENSCJAP00000028538	Uncharacterized protein.	Ras GTPase-activating protein-binding protein 1.	0.638
FMR1	G3BP2	ENSCJAP00000056898	ENSCJAP00000037041	Uncharacterized protein.	Ras GTPase-activating protein-binding protein 2 isoform a.	0.490
FMR1	NUFIP2	ENSCJAP00000056898	ENSCJAP00000024845	Uncharacterized protein.	Nuclear fragile X mental retardation-interacting protein 2.	0.740