Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF6Pre-mRNA-processing factor 6. (941 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.998
DDX23
Putative ATP-dependent RNA helicase DDX23.
   
 0.997
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.993
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.993
PRPF31
PRP31 pre-mRNA processing factor 31 homolog (Predicted).
   
 0.991
EFTUD2
116 kDa U5 small nuclear ribonucleoprotein component isoform a.
   
 0.986
PRPF4
Pre-mRNA processing factor 4.
   
 0.986
IK
IK cytokine.
   
 0.977
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
  0.976
TXNL4A
Uncharacterized protein.
    
 0.971
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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