STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX3Uncharacterized protein. (402 aa)    
Predicted Functional Partners:
ISL1
Insulin gene enhancer protein ISL-1.
   
0.943
ISL2
ISL LIM homeobox 2.
   
0.853
LDB1
LIM domain binding 1.
    
 0.849
LDB2
LIM domain-binding protein 2 isoform a.
    
 0.794
PRL
Growth hormone A1.
   
  
 0.732
ALX3
ALX homeobox 3.
   
0.725
POU1F1
POU domain protein.
   
 
 0.683
NEUROG2
Neurogenin 2.
   
  
 0.662
SCAI
Protein SCAI; Tumor suppressor which functions to suppress MRTFA-induced SRF transcriptional activity.
      
 0.646
TLE3
TLE family member 3, transcriptional corepressor.
      
 0.646
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.