STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNAPC4Small nuclear RNA activating complex polypeptide 4. (1445 aa)    
Predicted Functional Partners:
SNAPC1
snRNA-activating protein complex subunit 1.
    
 0.997
SNAPC3
Small nuclear RNA activating complex polypeptide 3.
    
 0.994
SNAPC5
Small nuclear RNA activating complex polypeptide 5.
    
 0.980
SNAPC2
Small nuclear RNA activating complex polypeptide 2.
    
 0.939
TBP
TATA-box binding protein.
    
 0.905
GTF2A1
Transcription initiation factor IIA subunit 1 isoform 1.
    
  0.893
GTF2B
Transcription initiation factor IIB.
    
 0.860
GTF2A2
TFIIA_gamma_N domain-containing protein.
    
  0.848
ENSCJAP00000075599
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
    
  0.848
TBPL2
TATA-box binding protein like 2.
    
 0.829
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.