STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF2E3 ubiquitin-protein ligase MARCH2 isoform 1. (246 aa)    
Predicted Functional Partners:
SERINC3
Serine incorporator 3.
   
  
 0.630
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 
 0.599
FBXO28
F-box protein 28.
   
    0.559
MARCHF5
Membrane associated ring-CH-type finger 5.
   
  
 0.542
MARCHF7
RING-CH-type domain-containing protein.
      
 0.482
SAMHD1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1.
   
  
 0.466
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.446
COMMD1
COMM domain-containing protein 1.
      
 0.424
SERINC5
Serine incorporator 5.
   
  
 0.415
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1.
    
 
 0.409
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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