Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
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Co-expression
Experiments
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[Homology]
Score
DGCR8Microprocessor complex subunit DGCR8 isoform 1. (773 aa)    
Predicted Functional Partners:
DROSHA
Ribonuclease 3 isoform 1.
    
 0.999
XPO5
Exportin 5.
   
  
 0.975
DICER1
Endoribonuclease Dicer isoform 1; Belongs to the helicase family. Dicer subfamily.
    
 0.959
AGO2
Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...]
   
 0.912
TARBP2
RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...]
    
 0.878
MRPL44
Mitochondrial ribosomal protein L44.
    
 0.826
AGO1
Argonaute RISC component 1; Belongs to the argonaute family.
   
 0.809
PRKRA
Interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1.
    
 0.809
USP36
Ubiquitin carboxyl-terminal hydrolase 36; Belongs to the peptidase C19 family.
    
 
 0.794
DDX5
Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.
    
 
 0.788
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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