STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTULINOTU deubiquitinase with linear linkage specificity. (352 aa)    
Predicted Functional Partners:
RNF31
E3 ubiquitin-protein ligase RNF31.
    
 0.989
RBCK1
RANBP2-type and C3HC4-type zinc finger containing 1.
    
 0.928
SHARPIN
SHANK associated RH domain interactor.
    
 0.927
SNX27
Sorting nexin family member 27 isoform 1 (Predicted).
    
 
 0.918
ENSCJAP00000059313
Uncharacterized protein.
    
 0.906
UBC
Uncharacterized protein.
    
 0.875
UBA52
Ubiquitin-like domain-containing protein.
    
 0.854
LOC100411827
Ubiquitin-like domain-containing protein.
    
 0.793
ENSCJAP00000060911
Ubiquitin-like domain-containing protein.
    
 0.759
ENSCJAP00000067340
Ubiquitin-like domain-containing protein.
    
 0.719
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.