STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMOtRNA methyltransferase O. (445 aa)    
Predicted Functional Partners:
FAM174A
Uncharacterized protein.
      
 0.560
ANKZF1
Ankyrin repeat and zinc finger domain-containing protein 1.
      
 0.549
COX18
Cytochrome c oxidase assembly factor COX18.
      
 0.527
SEC22A
SEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family.
      
 0.491
TIMM21
Translocase of inner mitochondrial membrane 21.
      
 0.481
VPS37C
Vacuolar protein sorting-associated protein 37C.
      
 0.479
UBE2W
UBIQUITIN_CONJUGAT_2 domain-containing protein.
      
 0.467
SLAIN2
SLAIN motif-containing protein 2.
      
 0.467
USP36
Ubiquitin carboxyl-terminal hydrolase 36; Belongs to the peptidase C19 family.
   
  
 0.417
USP25
Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family.
      
 0.400
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.