STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIL1Villin 1. (827 aa)    
Predicted Functional Partners:
CHGB
Chromogranin B.
    
 0.647
SMOC2
SPARC related modular calcium binding 2.
   
  
 0.647
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 
 0.610
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 
 0.585
LGR5
Leucine-rich repeat-containing G-protein coupled receptor 5.
    
 
 0.575
COG3
Component of oligomeric golgi complex 3.
    
 
 0.562
ENSCJAP00000056720
Espin.
   
 0.530
SPON1
Spondin 1.
   
  
 0.508
OLFM4
Olfactomedin 4.
   
  
 0.496
CASK
Uncharacterized protein; Belongs to the MAGUK family.
   
  0.491
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.