NUP88 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NUP88

Nuclear pore complex protein Nup88. (741 aa)

Predicted Functional Partners:

NUP214

0.998

NUP153

0.997

NUP93

0.996

NUP155

0.996

RANBP2

0.993

NUP85

0.992

RAE1

0.991

NUP205

0.991

SEH1L

0.989

NUP43

0.988

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NUP153	NUP155	ENSCJAP00000012474	ENSCJAP00000033236	Nuclear pore complex protein Nup153.	Nuclear pore complex protein Nup155 isoform 1.	0.994
NUP153	NUP205	ENSCJAP00000012474	ENSCJAP00000052957	Nuclear pore complex protein Nup153.	Nuclear pore complex protein Nup205.	0.989
NUP153	NUP214	ENSCJAP00000012474	ENSCJAP00000015766	Nuclear pore complex protein Nup153.	Nucleoporin 214.	0.997
NUP153	NUP43	ENSCJAP00000012474	ENSCJAP00000076460	Nuclear pore complex protein Nup153.	Nucleoporin 43.	0.993
NUP153	NUP85	ENSCJAP00000012474	ENSCJAP00000026771	Nuclear pore complex protein Nup153.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.996
NUP153	NUP88	ENSCJAP00000012474	ENSCJAP00000021044	Nuclear pore complex protein Nup153.	Nuclear pore complex protein Nup88.	0.997
NUP153	NUP93	ENSCJAP00000012474	ENSCJAP00000023034	Nuclear pore complex protein Nup153.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.995
NUP153	RAE1	ENSCJAP00000012474	ENSCJAP00000035561	Nuclear pore complex protein Nup153.	Ribonucleic acid export 1.	0.986
NUP153	RANBP2	ENSCJAP00000012474	ENSCJAP00000063818	Nuclear pore complex protein Nup153.	RAN binding protein 2.	0.995
NUP153	SEH1L	ENSCJAP00000012474	ENSCJAP00000009502	Nuclear pore complex protein Nup153.	Nucleoporin SEH1 isoform 1; Belongs to the WD repeat SEC13 family.	0.974
NUP155	NUP153	ENSCJAP00000033236	ENSCJAP00000012474	Nuclear pore complex protein Nup155 isoform 1.	Nuclear pore complex protein Nup153.	0.994
NUP155	NUP205	ENSCJAP00000033236	ENSCJAP00000052957	Nuclear pore complex protein Nup155 isoform 1.	Nuclear pore complex protein Nup205.	0.999
NUP155	NUP214	ENSCJAP00000033236	ENSCJAP00000015766	Nuclear pore complex protein Nup155 isoform 1.	Nucleoporin 214.	0.991
NUP155	NUP43	ENSCJAP00000033236	ENSCJAP00000076460	Nuclear pore complex protein Nup155 isoform 1.	Nucleoporin 43.	0.991
NUP155	NUP85	ENSCJAP00000033236	ENSCJAP00000026771	Nuclear pore complex protein Nup155 isoform 1.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.995
NUP155	NUP88	ENSCJAP00000033236	ENSCJAP00000021044	Nuclear pore complex protein Nup155 isoform 1.	Nuclear pore complex protein Nup88.	0.996
NUP155	NUP93	ENSCJAP00000033236	ENSCJAP00000023034	Nuclear pore complex protein Nup155 isoform 1.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.996
NUP155	RAE1	ENSCJAP00000033236	ENSCJAP00000035561	Nuclear pore complex protein Nup155 isoform 1.	Ribonucleic acid export 1.	0.979
NUP155	RANBP2	ENSCJAP00000033236	ENSCJAP00000063818	Nuclear pore complex protein Nup155 isoform 1.	RAN binding protein 2.	0.984
NUP155	SEH1L	ENSCJAP00000033236	ENSCJAP00000009502	Nuclear pore complex protein Nup155 isoform 1.	Nucleoporin SEH1 isoform 1; Belongs to the WD repeat SEC13 family.	0.982