STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DENND5ADENN domain containing 5A. (1287 aa)    
Predicted Functional Partners:
RAB6B
Uncharacterized protein.
    
 
 0.743
RAB6A
Ras-related protein Rab-6A isoform b.
    
 
 0.743
RAB13
Ras-related protein Rab-13 isoform 1.
     
 0.554
DENND4C
DENN domain containing 4C.
    
 
0.493
RAB28
RAB28, member RAS oncogene family.
     
 0.491
ENSCJAP00000074259
Uncharacterized protein.
     
 0.491
DENND1A
DENN domain-containing protein 1A isoform 1.
    
 
0.431
CHM
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
     
 0.425
RAB41
Uncharacterized protein.
    
 
 0.420
SLC35D2
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter.
 
      0.409
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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