STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDGFRLPlatelet-derived growth factor receptor-like protein. (375 aa)    
Predicted Functional Partners:
SCRIB
Uncharacterized protein.
   
 0.831
VEGFA
Vascular endothelial growth factor A; Belongs to the PDGF/VEGF growth factor family.
    
 0.783
PCDHB4
Protocadherin beta 4.
    
 
 0.775
FERMT3
Fermitin family member 3.
      
 0.771
NRP2
Neuropilin; Belongs to the neuropilin family.
     
 0.671
GRB2
Growth factor receptor-bound protein 2 isoform 1.
   
 0.648
TUSC3
Tumor suppressor candidate 3.
      
 0.640
RASA1
RAS p21 protein activator 1.
    
 0.637
VEGFC
Vascular endothelial growth factor C; Belongs to the PDGF/VEGF growth factor family.
   
 0.624
NRP1
Neuropilin; Belongs to the neuropilin family.
    
 0.617
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.