STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANKFY1Ankyrin repeat and FYVE domain containing 1. (1133 aa)    
Predicted Functional Partners:
RAB5B
Ras-related protein Rab-5B isoform 1.
   
 0.792
ZFYVE20
Rabenosyn, RAB effector.
   
  
0.740
DCUN1D3
DCN1-like protein.
    
 0.700
RABGEF1
Rab5 GDP/GTP exchange factor.
   
 0.682
DENND4C
DENN domain containing 4C.
     
 0.676
APPL1
DCC-interacting protein 13-alpha.
    
 0.660
APPL2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 0.660
VPS29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 0.651
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
      
 0.642
ZCCHC14
Zinc finger CCHC-type containing 14.
   
 
 0.636
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.