PDZD11 protein (Callithrix jacchus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDZD11

PDZ domain-containing protein 11. (140 aa)

Predicted Functional Partners:

TSPAN33

0.705

ATP7A

0.703

SLC5A6

0.702

ATP7B

0.628

IFT57

0.585

IFT80

0.541

TRAF3IP1

0.537

EIF1AX

0.537

ENSCJAP00000054910

0.537

ENSCJAP00000076336

0.537

Your Current Organism:

Callithrix jacchus

NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP7A	ATP7B	ENSCJAP00000063759	ENSCJAP00000015484	ATPase copper transporting alpha.	ATPase copper transporting beta.	0.906
ATP7A	PDZD11	ENSCJAP00000063759	ENSCJAP00000048728	ATPase copper transporting alpha.	PDZ domain-containing protein 11.	0.703
ATP7B	ATP7A	ENSCJAP00000015484	ENSCJAP00000063759	ATPase copper transporting beta.	ATPase copper transporting alpha.	0.906
ATP7B	PDZD11	ENSCJAP00000015484	ENSCJAP00000048728	ATPase copper transporting beta.	PDZ domain-containing protein 11.	0.628
EIF1AX	IFT80	ENSCJAP00000053461	ENSCJAP00000044000	Eukaryotic translation initiation factor 1A X-linked.	WD_REPEATS_REGION domain-containing protein.	0.500
EIF1AX	PDZD11	ENSCJAP00000053461	ENSCJAP00000048728	Eukaryotic translation initiation factor 1A X-linked.	PDZ domain-containing protein 11.	0.537
ENSCJAP00000054910	IFT57	ENSCJAP00000054910	ENSCJAP00000009106	Uncharacterized protein.	Intraflagellar transport 57.	0.993
ENSCJAP00000054910	IFT80	ENSCJAP00000054910	ENSCJAP00000044000	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
ENSCJAP00000054910	PDZD11	ENSCJAP00000054910	ENSCJAP00000048728	Uncharacterized protein.	PDZ domain-containing protein 11.	0.537
ENSCJAP00000054910	TRAF3IP1	ENSCJAP00000054910	ENSCJAP00000000722	Uncharacterized protein.	TRAF3 interacting protein 1.	0.988
ENSCJAP00000076336	PDZD11	ENSCJAP00000076336	ENSCJAP00000048728	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	PDZ domain-containing protein 11.	0.537
IFT57	ENSCJAP00000054910	ENSCJAP00000009106	ENSCJAP00000054910	Intraflagellar transport 57.	Uncharacterized protein.	0.993
IFT57	IFT80	ENSCJAP00000009106	ENSCJAP00000044000	Intraflagellar transport 57.	WD_REPEATS_REGION domain-containing protein.	0.998
IFT57	PDZD11	ENSCJAP00000009106	ENSCJAP00000048728	Intraflagellar transport 57.	PDZ domain-containing protein 11.	0.585
IFT57	TRAF3IP1	ENSCJAP00000009106	ENSCJAP00000000722	Intraflagellar transport 57.	TRAF3 interacting protein 1.	0.994
IFT80	EIF1AX	ENSCJAP00000044000	ENSCJAP00000053461	WD_REPEATS_REGION domain-containing protein.	Eukaryotic translation initiation factor 1A X-linked.	0.500
IFT80	ENSCJAP00000054910	ENSCJAP00000044000	ENSCJAP00000054910	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
IFT80	IFT57	ENSCJAP00000044000	ENSCJAP00000009106	WD_REPEATS_REGION domain-containing protein.	Intraflagellar transport 57.	0.998
IFT80	PDZD11	ENSCJAP00000044000	ENSCJAP00000048728	WD_REPEATS_REGION domain-containing protein.	PDZ domain-containing protein 11.	0.541
IFT80	TRAF3IP1	ENSCJAP00000044000	ENSCJAP00000000722	WD_REPEATS_REGION domain-containing protein.	TRAF3 interacting protein 1.	0.990