STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGBL1ATP/GTP binding protein like 1. (1103 aa)    
Predicted Functional Partners:
LOXHD1
Lipoxygenase homology domains 1.
     
 0.910
SLC4A11
Solute carrier family 4 member 11.
   
  
 0.818
COL8A2
Collagen type VIII alpha 2 chain.
      
 0.778
KANK4
KN motif and ankyrin repeat domains 4.
    
 
 0.576
SPOCK2
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2.
      
 0.499
TTLL4
Tubulin tyrosine ligase like 4.
   
 
 0.470
TTLL2
Tubulin tyrosine ligase like 2.
      
 0.450
ERAL1
Era like 12S mitochondrial rRNA chaperone 1.
   
 
 0.448
ZEB1
Zinc finger E-box-binding homeobox 1 isoform f.
      
 0.447
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.