STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RLIMRing finger protein, LIM domain interacting. (620 aa)    
Predicted Functional Partners:
LOC100391294
Uncharacterized protein.
   
 0.870
UBA52
Ubiquitin-like domain-containing protein.
    
 0.813
ENSCJAP00000059313
Uncharacterized protein.
    
 0.795
UBE2D3
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.786
UBE2D2
Ubiquitin-conjugating enzyme E2 D2 isoform 1; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.786
UBE2D1
Ubiquitin conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.759
LOC100411827
Ubiquitin-like domain-containing protein.
    
 0.736
NEXMIF
Neurite extension and migration factor.
 
    
 0.712
ENSCJAP00000060911
Ubiquitin-like domain-containing protein.
    
 0.692
UBE2D4
Ubiquitin conjugating enzyme E2 D4 (putative); Belongs to the ubiquitin-conjugating enzyme family.
   
 0.677
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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