STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCPEP1Carboxypeptidase; Belongs to the peptidase S10 family. (454 aa)    
Predicted Functional Partners:
LPAR4
Lysophosphatidic acid receptor 4; Belongs to the G-protein coupled receptor 1 family.
      
 0.747
TRIP6
Thyroid receptor-interacting protein 6.
      
 0.582
GJB5
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.569
JAKMIP2
Janus kinase and microtubule-interacting protein 2 isoform 1.
      
 0.569
UTS2R
Urotensin 2 receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.557
PTTG1IP
PTTG1 interacting protein.
      
 0.554
RASL10B
Ras-like protein family member 10B.
    
 0.542
NEU1
Neuraminidase 1.
   
 0.532
AHDC1
AT-hook DNA-binding motif-containing protein 1.
      
 0.465
SEMA6A
Sema domain-containing protein; Belongs to the semaphorin family.
      
 0.462
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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