STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LYPD1Ly6/PLAUR domain-containing protein 1 isoform a. (141 aa)    
Predicted Functional Partners:
NABP1
SOSS complex subunit B2 isoform 1.
      
 0.620
GPR39
G protein-coupled receptor 39; Belongs to the G-protein coupled receptor 1 family.
   
  
 0.586
VAT1L
Synaptic vesicle membrane protein VAT-1 homolog-like.
      
 0.583
BATF2
Basic leucine zipper transcription factor, ATF-like 2 (Predicted).
   
  
 0.455
SULF2
Extracellular sulfatase; Exhibits arylsulfatase activity and highly specific endoglucosamine-6-sulfatase activity. It can remove sulfate from the C- 6 position of glucosamine within specific subregions of intact heparin.
   
  
 0.449
GJB6
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.429
PCDH20
Protocadherin-20.
      
 0.428
CBLN2
Cerebellin 2 precursor.
      
 0.428
KCNC3
Potassium voltage-gated channel subfamily C member 3; Belongs to the potassium channel family.
   
  
 0.428
TRIM54
Tripartite motif containing 54.
      
 0.426
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.