STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRAF7E3 ubiquitin-protein ligase TRAF7. (670 aa)    
Predicted Functional Partners:
MIB2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.952
BIRC6
Baculoviral IAP repeat-containing protein 6.
    
 0.946
ZFAND4
Zinc finger AN1-type containing 4.
   
 0.923
UBA52
Ubiquitin-like domain-containing protein.
    
  0.886
ENSCJAP00000052511
Ubiquitin-like domain-containing protein.
    
  0.886
LOC100411827
Ubiquitin-like domain-containing protein.
    
  0.886
ENSCJAP00000060911
Ubiquitin-like domain-containing protein.
    
  0.886
ENSCJAP00000064102
Ubiquitin-like domain-containing protein.
    
  0.886
ENSCJAP00000067340
Ubiquitin-like domain-containing protein.
    
  0.886
ENSCJAP00000070871
Ubiquitin-like domain-containing protein.
    
  0.886
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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