STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VTI1Bt-SNARE coiled-coil homology domain-containing protein. (232 aa)    
Predicted Functional Partners:
YKT6
Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.
    
 0.986
STX8
Syntaxin 8.
   
 0.983
STX6
Syntaxin 6; Belongs to the syntaxin family.
   
 0.973
STX7
Syntaxin 7 (Predicted); Belongs to the syntaxin family.
   
 0.962
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
    
0.944
STX16
Syntaxin 16; Belongs to the syntaxin family.
   
 0.931
VAMP8
Vesicle associated membrane protein 8.
   
 0.896
CLINT1
Clathrin interactor 1 isoform 1.
    
 
 0.881
STX5
Syntaxin-5 isoform 1; Belongs to the syntaxin family.
    
 
 0.874
NAPB
NSF attachment protein beta.
    
 0.857
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.