STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF19ARBR-type E3 ubiquitin transferase. (838 aa)    
Predicted Functional Partners:
RNF7
Uncharacterized protein.
    
 0.747
IFT74
Intraflagellar transport protein 74 homolog isoform a.
    
 0.687
RNF7-2
RING-type domain-containing protein.
    
 0.676
TRIP12
Uncharacterized protein.
   
 
 0.666
UBE2L3
Ubiquitin conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.651
CGRRF1
Cell growth regulator with RING finger domain protein 1.
   
 
 0.648
RNF183
Ring finger protein 183.
   
 0.647
RNF223
RING finger protein 223.
   
 0.647
RNF130
E3 ubiquitin-protein ligase RNF130.
    
 0.634
RNFT2
Ring finger protein, transmembrane 2.
      
 0.629
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.