STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF1ATATA box-binding protein-associated factor RNA polymerase I subunit A isoform 1. (450 aa)    
Predicted Functional Partners:
TAF1B
TATA-box binding protein associated factor, RNA polymerase I subunit B.
   
 0.978
TAF1D
TATA-box binding protein associated factor, RNA polymerase I subunit D.
    
 0.971
TBP
TATA-box binding protein.
    
 0.968
TAF1C
TATA box-binding protein-associated factor RNA polymerase I subunit C isoform 3.
    
 0.935
TBPL2
TATA-box binding protein like 2.
    
 0.847
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
    
 0.783
POLR1E
DNA-directed RNA polymerase I subunit RPA49.
     
 0.771
CD3EAP
CD3e molecule associated protein.
     
 0.725
POLR1A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.695
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.682
Your Current Organism:
Callithrix jacchus
NCBI taxonomy Id: 9483
Other names: C. jacchus, Callithrix jacchus jacchus, common marmoset, white ear-tufted marmoset, white-tufted-ear marmoset
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